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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142803460_142807439_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142803460 - 142807439
Intron Length:
3980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
CAGLDPVPIEQLIPYVEEDG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.5
0.71
0.8
76.4
32.2
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
MED30
Ensembl Gene ID:
ENSAPLG00000014888
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015516
142801903 - 142817500
15598