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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142807551_142817404_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142807551 - 142817404
Intron Length:
9854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AATCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATAAAAT
Flanking Amino Acid:
ERREIMEVNKKLKQKNQQLK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.8
0.51
0.9
65.9
35
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.1
0.24
2.1
78.39
43.5

Associated Gene:

Gene:
MED30
Ensembl Gene ID:
ENSAPLG00000014888
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015516
142801903 - 142817500
15598