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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142850812_142864490_R

Intron Information:

Intron Rank:
149327
Intron Class:
major
Intron Phase:
Intron Coordinates:
142850812 - 142864490
Intron Length:
13679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TGTCTCTCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
68.7
0.42
1
67.3
32.8
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
48.1
-0.1
1.8
60.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020238
142850710 - 142865613
14904