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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142855023_142864490_R

Intron Information:

Intron Rank:
149330
Intron Class:
major
Intron Phase:
Intron Coordinates:
142855023 - 142864490
Intron Length:
9468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TCTAAAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
73
0.57
1
73.6
28.6
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
47.9
-0
2.1
72.42
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024536
142854198 - 142865613
11416