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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142864754_142866084_R

Intron Information:

Intron Rank:
149329
Intron Class:
major
Intron Phase:
Intron Coordinates:
142864754 - 142866084
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
CTACCACCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTAATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.7
44.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.6
0.44
0.9
59.1
37
Minor 5ss
30.5
-2.2
2.5
34.4
41.1
Minor BPS
52.3
0.15
1.9
77.3
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027843
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023018
142849892 - 142866408
16517