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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142904834_142905795_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142904834 - 142905795
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCATGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATCTGTATG
Flanking Amino Acid:
KQYKETMMGQVVFSSSDSSG
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
100
1.24
0.5
100
0
Major PPT
67.6
0.4
1
62
38.4
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
48.4
-0.2
1.9
60.38
41.9

Associated Gene:

Gene:
EXT1
Ensembl Gene ID:
ENSAPLG00000009944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042188
142904603 - 143065872
161270