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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142913643_142914370_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142913643 - 142914370
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGGTCCAACATT
Flanking Amino Acid:
AVAKSQYCAKIIVLWNCDKP
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
82.3
0.73
0.8
73.4
36.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
44.4
-0.3
2.3
65.2
45.5

Associated Gene:

Gene:
EXT1
Ensembl Gene ID:
ENSAPLG00000009944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042188
142904603 - 143065872
161270
ENSAPLT00000022492
142903180 - 143065872
162693
ENSAPLT00000010361
142903180 - 143065872
162693