About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142915931_142924702_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142915931 - 142924702
Intron Length:
8772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GGCTATTTAACA
Flanking Amino Acid:
VIGDERLLLQIIQDRIFKHI
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
88
0.85
0.8
80.2
37.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
61.5
0.36
1.5
65.83
40.4

Associated Gene:

Gene:
EXT1
Ensembl Gene ID:
ENSAPLG00000009944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022492
142903180 - 143065872
162693