Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_142924811_142927517_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142924811 - 142927517

Intron Length:

2707

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTGTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

AGCCCACTAACG

Flanking Amino Acid:

GSFRFLEALQAACVPVMLSN

Intron Amino Acid Position:

351

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

64.5

0.36

65.2

28.2

Major PPT

70.7

0.47

64.5

41.4

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

45.6

-0.4

50.58

42.6

Associated Gene:

Gene:

EXT1

Ensembl Gene ID:

ENSAPLG00000009944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042188

142904603 - 143065872

161270

ENSAPLT00000022492

142903180 - 143065872

162693

ENSAPLT00000010361

142903180 - 143065872

162693