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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143172070_143209570_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143172070 - 143209570
Intron Length:
37501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
CTTTTGCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
SESFKQHDITGRALLRLTDK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.3
0.64
0.9
70
40.6
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
SAMD12
Ensembl Gene ID:
ENSAPLG00000009933
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010343
143093780 - 143254167
160388