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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143209701_143237262_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143209701 - 143237262
Intron Length:
27562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
TCTGCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTTCATT
Flanking Amino Acid:
KNTLSVLPCLSGTVKLTKPV
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.2
42.6
Major BPS
100
1.24
0.5
100
0
Major PPT
80.5
0.69
0.8
73
37.3
Minor 5ss
39.8
-1.1
2.8
46.2
43.5
Minor BPS
53.7
0.2
1.7
69.97
42.5

Associated Gene:

Gene:
SAMD12
Ensembl Gene ID:
ENSAPLG00000009933
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010343
143093780 - 143254167
160388