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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14322448_14345517_R

Intron Information:

Intron Rank:
154016
Intron Class:
major
Intron Phase:
Intron Coordinates:
14322448 - 14345517
Intron Length:
23070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAATAG
5'SS Class:
major
3'SS Sequence:
TGTTGTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ATCTCTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
63.7
37.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
77.2
0.61
0.9
74.7
40
Minor 5ss
42.7
-0.8
3
55.2
49
Minor BPS
68.6
0.66
1.6
83.17
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030532
14322057 - 14347280
25224