About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143237917_143254154_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143237917 - 143254154
Intron Length:
16238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAA
U12 Branch Point Sequence:
TCTTTCCTAAGC
Flanking Amino Acid:
MAVEAIHCNLNPNG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
59.6
0.24
1.3
58.7
39.9
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
55.8
0.16
2
70.2
41.5

Associated Gene:

Gene:
SAMD12
Ensembl Gene ID:
ENSAPLG00000009933
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010343
143093780 - 143254167
160388