Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143312436_143314328_F

Intron Information:

Intron Rank:

139540

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

143312436 - 143314328

Intron Length:

1893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGTGC

5'SS Class:

strong_major

3'SS Sequence:

AACTTGGGCTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTCCTTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

66.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

57.7

0.17

1.1

53.8

Minor 5ss

43.2

-0.7

3.1

58.8

46.1

Minor BPS

87.1

1.24

0.9

97.56

25.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022468

143310320 - 143316406

6087