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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143315656_143316359_F

Intron Information:

Intron Rank:
139542
Intron Class:
major
Intron Phase:
Intron Coordinates:
143315656 - 143316359
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
AAATTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTTTCTTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
58.7
42.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.6
0.6
0.9
74.5
40.2
Minor 5ss
35.2
-1.7
3.2
43.7
44.3
Minor BPS
64.9
0.55
1.7
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025029
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022468
143310320 - 143316406
6087