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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143330558_143335328_F

Intron Information:

Intron Rank:
144546
Intron Class:
major
Intron Phase:
Intron Coordinates:
143330558 - 143335328
Intron Length:
4771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAGACCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.3
0.46
0.8
61.2
34.7
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
68.4
0.66
1.3
75.37
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030871
143330219 - 143342491
12273
ENSAPLT00000022865
143330219 - 143335952
5734