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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143335393_143342052_F

Intron Information:

Intron Rank:
144549
Intron Class:
major
Intron Phase:
Intron Coordinates:
143335393 - 143342052
Intron Length:
6660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
62
0.3
1
53
34.1
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030871
143330219 - 143342491
12273