Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143353081_143356413_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143353081 - 143356413

Intron Length:

3333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTTCC

5'SS Class:

strong_major

3'SS Sequence:

ACTGTTTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TTATATATAATT

Flanking Amino Acid:

CPPGFGVAQPGTPESDTVCK

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

34.6

Major BPS

0.72

78.4

31.2

Major PPT

0.56

0.9

68.7

36.7

Minor 5ss

40.4

-1.1

2.9

53.8

43.4

Minor BPS

58.2

0.33

1.8

78.85

37.1

Associated Gene:

Gene:

TNFRSF11B

Ensembl Gene ID:

ENSAPLG00000009749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010148

143347889 - 143356813

8925