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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143366685_143367158_F

Intron Information:

Intron Rank:
140042
Intron Class:
major
Intron Phase:
Intron Coordinates:
143366685 - 143367158
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGAG
5'SS Class:
major
3'SS Sequence:
TTCTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTATTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
63.2
43.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.2
0.77
0.8
79.4
32.3
Minor 5ss
26.1
-2.8
3.1
31
43.1
Minor BPS
56.4
0.19
2
71.69
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025288
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039734
143365775 - 143367483
1709