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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143413942_143424288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143413942 - 143424288
Intron Length:
10347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATGT
Flanking Amino Acid:
STHTILPGPKGDEGEKGDRG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62
0.27
1.2
64.7
41.1
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
52.5
0.16
1.9
75.61
41.6

Associated Gene:

Gene:
COLEC10
Ensembl Gene ID:
ENSAPLG00000019811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019169
143413794 - 143433048
19255