About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143424361_143426011_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143424361 - 143426011
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCATCCATACCT
Flanking Amino Acid:
QGKVGPKGPKGNKGTVGDVG
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.6
88.5
21
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
51.4
0.12
2
69.44
47

Associated Gene:

Gene:
COLEC10
Ensembl Gene ID:
ENSAPLG00000019811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019169
143413794 - 143433048
19255