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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143428259_143429379_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143428259 - 143429379
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAACAGATAAAT
Flanking Amino Acid:
IGVSGKKGKAGTVCDCGRYR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
64.9
0.34
1
62.8
43
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
37.8
-0.8
2.2
52.53
40.7

Associated Gene:

Gene:
COLEC10
Ensembl Gene ID:
ENSAPLG00000019811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019169
143413794 - 143433048
19255