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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143429476_143430948_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143429476 - 143430948
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
ATGCCATGAATG
Flanking Amino Acid:
LNTSIKFVKNVIAGIRETDE
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
83.8
0.76
0.7
82.3
29.8
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
48
-0.2
1.8
53.77
40.9

Associated Gene:

Gene:
COLEC10
Ensembl Gene ID:
ENSAPLG00000019811
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019169
143413794 - 143433048
19255