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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143449336_143451402_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143449336 - 143451402
Intron Length:
2067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTCGT
5'SS Class:
major
3'SS Sequence:
CCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
ATTGTCTGCATT
Flanking Amino Acid:
YSGAFIFLEILFGTIVWILV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
61.4
44.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
32
-2.1
3
41.9
39.1
Minor BPS
47.9
-0
2
70.32
41.3

Associated Gene:

Gene:
MAL2
Ensembl Gene ID:
ENSAPLG00000018801
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040012
143449201 - 143461104
11904