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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143510517_143511816_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143510517 - 143511816
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATATTT
Flanking Amino Acid:
PCENEAPSDKKGKKCIRTKK
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.8
0.58
0.8
74.5
35.5
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
54
0.21
1.9
76
41.3

Associated Gene:

Gene:
CCN3
Ensembl Gene ID:
ENSAPLG00000006728
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006984
143507504 - 143512139
4636