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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143531378_143533060_R

Intron Information:

Intron Rank:
145538
Intron Class:
major
Intron Phase:
Intron Coordinates:
143531378 - 143533060
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
77.8
38.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
34.4
-1.8
3.2
42.1
44.8
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046437
143530976 - 143534718
3743