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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143554146_143558986_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143554146 - 143558986
Intron Length:
4841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAACT
Flanking Amino Acid:
HRPDNDESCNSMEDESKWVE
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
64.7
0.54
1.7
84.57
35.1

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020544
143553975 - 143611416
57442
ENSAPLT00000047212
143553975 - 143627038
73064
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047137
143553975 - 143625879
71905
ENSAPLT00000042410
143553975 - 143611805
57831
ENSAPLT00000023808
143553975 - 143625879
71905