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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143562501_143563587_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143562501 - 143563587
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTCATTAGTA
Flanking Amino Acid:
QLSYGFLFPPQLSSSAEAKY
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
70.3
36.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
42
-0.9
2.7
51.3
39.7
Minor BPS
54.7
0.14
1.8
66.94
39.7

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023808
143553975 - 143625879
71905
ENSAPLT00000020544
143553975 - 143611416
57442
ENSAPLT00000047212
143553975 - 143627038
73064
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047137
143553975 - 143625879
71905
ENSAPLT00000042410
143553975 - 143611805
57831