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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143564368_143566988_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143564368 - 143566988
Intron Length:
2621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTCTGATCT
Flanking Amino Acid:
NKRFHVKGTEEKHLLYGRPA
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.6
0.58
0.8
69.7
35.8
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
61.2
0.43
1.7
80.23
41.8

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023808
143553975 - 143625879
71905
ENSAPLT00000020544
143553975 - 143611416
57442
ENSAPLT00000047212
143553975 - 143627038
73064
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047137
143553975 - 143625879
71905
ENSAPLT00000042410
143553975 - 143611805
57831