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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143599363_143600565_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143599363 - 143600565
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
AAATGCTGACTT
Flanking Amino Acid:
EEIKTPECPAGFVRPPLIIF
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
70
0.5
1
67
39.8
Major PPT
86.7
0.83
0.7
84.9
29.6
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
45.1
-0.2
2
61.37
42.4

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020544
143553975 - 143611416
57442
ENSAPLT00000047212
143553975 - 143627038
73064
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047137
143553975 - 143625879
71905
ENSAPLT00000042410
143553975 - 143611805
57831
ENSAPLT00000023808
143553975 - 143625879
71905