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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143600627_143602990_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143600627 - 143602990
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATTTTAAACT
Flanking Amino Acid:
CCTNYQVVCKGETHWVDDDC
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.8
0.44
1
66.5
35
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
55.6
0.26
1.7
68.47
42.8

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042410
143553975 - 143611805
57831
ENSAPLT00000023808
143553975 - 143625879
71905
ENSAPLT00000020544
143553975 - 143611416
57442
ENSAPLT00000047212
143553975 - 143627038
73064
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047137
143553975 - 143625879
71905