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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143605423_143611214_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143605423 - 143611214
Intron Length:
5792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCTTGTTCCACA
Flanking Amino Acid:
SEEWDEGPVSVLSDSPWIST
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
74.7
0.56
0.9
69.7
35.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
45.6
-0.3
2.3
62.68
44.2

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047137
143553975 - 143625879
71905
ENSAPLT00000042410
143553975 - 143611805
57831
ENSAPLT00000023808
143553975 - 143625879
71905
ENSAPLT00000007280
143553975 - 143611645
57671
ENSAPLT00000047212
143553975 - 143627038
73064