About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143611318_143611754_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143611318 - 143611754
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTGCACAGTT
Flanking Amino Acid:
QITRACQPHQVISLFAFAFG
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.8
33
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
89.3
0.88
0.7
84.5
30.4
Minor 5ss
34.7
-1.7
3.4
46.4
48.9
Minor BPS
45
-0.3
2.3
73.26
43.8

Associated Gene:

Gene:
ENPP2
Ensembl Gene ID:
ENSAPLG00000006897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042410
143553975 - 143611805
57831