Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143649482_143658596_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143649482 - 143658596

Intron Length:

9115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAATA

5'SS Class:

strong_major

3'SS Sequence:

TAATTTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

ATTTTATTAATT

Flanking Amino Acid:

LNMLERPSTPGKEQSSGEVN

Intron Amino Acid Position:

1062

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

82.5

29.7

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

79.9

0.67

0.8

78.3

35.6

Minor 5ss

43.1

-0.8

2.9

57.4

46.9

Minor BPS

72.4

0.78

1.5

87.23

31.6

Associated Gene:

Gene:

TAF2

Ensembl Gene ID:

ENSAPLG00000007663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031732

143648440 - 143703454

55015

ENSAPLT00000008007

143649216 - 143703454

54239