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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143664569_143665939_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143664569 - 143665939
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGGATTTAATA
Flanking Amino Acid:
MVQNDPVPYIRHKILDMLTK
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.5
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.6
0.76
0.8
82
34.8
Minor 5ss
28.4
-2.5
2.9
31.8
42.6
Minor BPS
58.8
0.27
1.6
67.55
39.7

Associated Gene:

Gene:
TAF2
Ensembl Gene ID:
ENSAPLG00000007663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031732
143648440 - 143703454
55015
ENSAPLT00000008007
143649216 - 143703454
54239