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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143678852_143679477_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143678852 - 143679477
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTATATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTACTA
Flanking Amino Acid:
HDIPCHSKSRRNKKKKIPLM
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81
0.7
0.8
77.1
30.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61.4
0.35
1.8
75.77
36

Associated Gene:

Gene:
TAF2
Ensembl Gene ID:
ENSAPLG00000007663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031732
143648440 - 143703454
55015
ENSAPLT00000008007
143649216 - 143703454
54239