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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143679802_143681803_R

Intron Information:

Intron Rank:
12
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
143679802 - 143681803
Intron Length:
2002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TACTGCTTTTTAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
AATTCCTATACT
Flanking Amino Acid:
KDIQPLIKQWVDQSGVVKFY
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.3
55.3
44.3
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
76.2
0.59
0.8
73.6
36.7
Minor 5ss
96.7
1.57
0.7
90.9
28.7
Minor BPS
60.4
0.41
2
79.53
42.4

Associated Gene:

Gene:
TAF2
Ensembl Gene ID:
ENSAPLG00000007663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031732
143648440 - 143703454
55015
ENSAPLT00000008007
143649216 - 143703454
54239