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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143683567_143688098_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143683567 - 143688098
Intron Length:
4532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
PIFGGGKEKDNPASHLHFSI
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
TAF2
Ensembl Gene ID:
ENSAPLG00000007663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031732
143648440 - 143703454
55015
ENSAPLT00000008007
143649216 - 143703454
54239