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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14368509_14368950_F

Intron Information:

Intron Rank:
124244
Intron Class:
major
Intron Phase:
Intron Coordinates:
14368509 - 14368950
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AAATAGTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.8
0.83
0.7
81.5
23.5
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
46.9
-0.3
2.2
53.05
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023292
14367877 - 14369695
1819