Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143688185_143689814_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143688185 - 143689814

Intron Length:

1630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAACA

5'SS Class:

strong_major

3'SS Sequence:

TTGTACTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TTATTCTCACTT

Flanking Amino Acid:

VNEYRHWIKQELDQIVAYEL

Intron Amino Acid Position:

388

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

76.3

32.4

Major BPS

0.87

0.8

85.6

Major PPT

79.9

0.67

0.8

77.9

36.2

Minor 5ss

33.8

-1.8

2.8

44.2

Minor BPS

56.1

0.27

1.8

76.49

40.5

Associated Gene:

Gene:

TAF2

Ensembl Gene ID:

ENSAPLG00000007663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008007

143649216 - 143703454

54239

ENSAPLT00000031732

143648440 - 143703454

55015