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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143693106_143693467_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143693106 - 143693467
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TAATTGTTAACC
Flanking Amino Acid:
VFSCGYQNSTRFWFPCVDSY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
69.4
0.44
0.9
61.9
39.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
61
0.32
2
72.05
38.8

Associated Gene:

Gene:
TAF2
Ensembl Gene ID:
ENSAPLG00000007663
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031732
143648440 - 143703454
55015
ENSAPLT00000008007
143649216 - 143703454
54239