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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14369631_14370171_R

Intron Information:

Intron Rank:
138562
Intron Class:
major
Intron Phase:
Intron Coordinates:
14369631 - 14370171
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAACCA
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
ATTTCCCAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.7
36.1
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
81.2
0.7
0.8
75.8
32.7
Minor 5ss
26.2
-2.7
2.9
31.2
42.4
Minor BPS
61.9
0.37
2
78.72
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030957
14368489 - 14370310
1822