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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143706763_143707562_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143706763 - 143707562
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGATT
5'SS Class:
major
3'SS Sequence:
ATTTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATATCAATACCA
Flanking Amino Acid:
WTEEDITPYIQDLCSEKQTV
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
76.6
38.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
82.8
0.74
0.7
78.1
29.9
Minor 5ss
40.4
-1.1
3.4
63.3
42
Minor BPS
47.6
-0.1
2.1
65.3
40.3

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340