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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143707712_143708267_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143707712 - 143708267
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTAATTAACG
Flanking Amino Acid:
GMTTRLDQLKGLALVDKNSR
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.2
0.52
0.9
65.4
40.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
63.4
0.28
1.9
72.59
39.3

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340