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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143708426_143709657_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143708426 - 143709657
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
AAAGCAAGAACC
Flanking Amino Acid:
LSYGRKYTDDAGEVYFEMRE
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
72.2
39.9
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
89.1
0.88
0.7
88.2
29.1
Minor 5ss
40.5
-1.1
3.3
52.3
45.8
Minor BPS
42.1
-0.6
1.9
50.75
38.7

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340