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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143710581_143712452_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143710581 - 143712452
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTCTATTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
LEVLDACKIEGFWRVLEFDY
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79
0.65
1
76.5
37.3
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340