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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143712544_143714926_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143712544 - 143714926
Intron Length:
2383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGGAT
U12 Branch Point Sequence:
GTAAGGATAACC
Flanking Amino Acid:
GKDQTSAVSHYTTEDLLSVV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
51.9
0.05
1.4
51.7
43.9
Major PPT
84.5
0.78
0.8
79.8
32.1
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
40.3
-0.7
2.5
53.93
43.2

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340