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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143716746_143718117_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143716746 - 143718117
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCAT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GCATCTTTATTT
Flanking Amino Acid:
GLCAQLEAGASLVIRGEKDE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
60.7
45.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
36.9
-1.5
3.6
55.9
48.3
Minor BPS
58.3
0.34
1.6
69.05
42.4

Associated Gene:

Gene:
DSCC1
Ensembl Gene ID:
ENSAPLG00000008065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008378
143705417 - 143718756
13340