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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143759315_143761362_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143759315 - 143761362
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
KLLDHSIIHHVCDEHKEFKD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.6
0.71
0.8
78.2
34.6
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
DEPTOR
Ensembl Gene ID:
ENSAPLG00000008162
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042322
143731607 - 143787621
56015
ENSAPLT00000008488
143731607 - 143805112
73506