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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_143786889_143787076_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143786889 - 143787076
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTGT
U12 Branch Point Sequence:
TGTTTCTTGTCT
Flanking Amino Acid:
SGPAAAAGMKRFSIESQSGL
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.4
39.2
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
75.7
0.58
0.8
69
37
Minor 5ss
27.9
-2.5
3.3
40.6
45.6
Minor BPS
48.7
-0
3.5
83.36
37.8

Associated Gene:

Gene:
DEPTOR
Ensembl Gene ID:
ENSAPLG00000008162
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042322
143731607 - 143787621
56015